NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167652_1008414

Scaffold Ga0167652_1008414


Overview

Basic Information
Taxon OID3300015164 Open in IMG/M
Scaffold IDGa0167652_1008414 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2303
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.900879Long. (o)18.43474Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000664Metagenome / Metatranscriptome950Y
F010770Metagenome / Metatranscriptome299Y

Sequences

Protein IDFamilyRBSSequence
Ga0167652_10084143F000664GGAGMADTSMTGTFQLDLPKDLLSEAKRQSMPQGQQLHVEGWRTTWLSRISELLVGKD*
Ga0167652_10084144F010770AGGAGGMRLARPVYESLPVIYAAIGGLALAVAYLDPDAPQTVAALVIGMVAEVAALTVFLRRLDYRALSREYSGEIIDLPSRLNR*

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