NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167661_1102410

Scaffold Ga0167661_1102410


Overview

Basic Information
Taxon OID3300015167 Open in IMG/M
Scaffold IDGa0167661_1102410 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11b, vegetated hydrological feature)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.904687Long. (o)18.610965Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065082Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0167661_11024101F065082N/AAQLGTALEALRLNQLSREERRRASILVEVATALHSLPDTAAVMESIADRLRVLLHSPAVLVFVQQEKSFQLQAVSTETPKLALAIRSRFQQNDLRSSLEIATRAVSAGERITVSIDGASHFGEDSPPGVLIAAPFRTSRSHGAILVYPRLASPFTQEDKTLVSALS
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