Scaffold Ga0167631

Basic Information
Taxon OID	3300015168 Open in IMG/M
Scaffold ID	Ga0167631_1000001 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Bristol

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	729241
Total Scaffold Genes	616 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	351 (56.98%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

729241

Total Scaffold Genes

616 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

351 (56.98%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell Glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.156854	Long. (^o)	-50.082619	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Russell Glacier, Kangerlussuaq, Greenland

Coordinates

Lat. (^o)

67.156854

Long. (^o)

-50.082619

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F041500	Metagenome	160	Y
F068684	Metagenome	124	Y
F086047	Metagenome / Metatranscriptome	111	Y
F089338	Metagenome / Metatranscriptome	109	Y
F093614	Metagenome / Metatranscriptome	106	Y
F096991	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0167631_1000001132	F089338	GGAG	MTLLQIEDALTDEEELALRSGLTVKCSWCGEIIQLHGKELALAMCQVCYERMLAEFLRAQQANQAPRHASDR*
Ga0167631_1000001133	F086047	GGAGG	MNAQQITFPFRRKKPRGLNVPNADLIGRSYTEGQATIVVTNVCLNDQNRVMVERDLDGRTWSMPAWLMRLIFLETKRKRAA*
Ga0167631_1000001252	F093614	GGAGG	VIKQEPDAKELDFLKELEKHVNKWVAITGYGSDQESIVASGDSIIEARQKAESQGFKDTTFFKVPPSDKIFVPLVPV*
Ga0167631_1000001316	F041500	GGAGG	MPKTRKPGRPKLPKGHVKGSYIPIRVNDEDRKLFEKAAKASEHKSVSGWLRHVAREAAQVK*
Ga0167631_1000001396	F096991	GAG	MNPRDEDRISRRSFLRSAVAAMTVPRLLLPQDSNPPASLNYVHVEQSNGNRICWLDVCAPFIVEDPEIGLHSEVVLTSDTFVGAKGYADGADATEYEIYLYDAAGKPVGAEGVARRLVVPAMQMTVLSLRDILGNNDRFWGGMRIRLRPKGRQPMHASDLFSSAFVRWKTQASFDNVHANPDPLQWQRADRFFYSMPHPPLAEYETMFSLFNPYAERSLGAITLYDQMGVKLRDVPYELKPHSSLLFDLRLGDFVNDPRPAFGGFGAKHHVDSKLLNPGGGTIAITNQQASVKGFGYLLIKRAGTNRFSVEHPIHQAPFKPVPAAAPFDTAGRFKAKNILFTPMVFRSKRIGGVTLESRFHFSSGAPLEEFLWINPLITDSEGKVAWQSTVDTKLPEAISASQIERGVIKLGGMQSCMLDCTQLPLPKAFSGGLSLAVAPTTNHTLMKVETSVKEWGAHAFTHFRPGLQSARGYQASSPRGGLATDYIASGARVEKTGNKIVRDEIIGVMNIDDKGLSGRPALEIFTSSGLLERIELGDVPSFGCRHYLLSELSSGKIGQHDLSLRLVDERATLLMSVVHLDYVRRDLAMDHGSDRFSTFNDYSCDASR*
Ga0167631_1000001455	F068684	N/A	MDILLSGTQTVHTTRLYRICTVIIFCVFICACSHPTVPAGPKFRGRLLLLAGENTNGADLLELTAAPDGSTYNHSIVTSGVFEAGASPDRTRLLYTTTDGIQLRDLRTGAVKPLVKGDNFCLAWSPDGNRFSYRQRSPAQEKVPISEGGARTKLFVSDLDGKAKLIWEDLLVDYDSAQGQSSANERAAGSSGCAHWIAPDRLIFDRLLGAFPKQRKGGEALKPNTTTLAILSDTVKLVDTERKWSIEGVCQVGSGAFVRPHDQAQPILIAKSLDRLDTLNPTPVSCSGCRFIGFAAQSCVPFFIEDATATTSEIFSLNPTNWQRQRGTRVTQTFSVAARGLINSAARLMIVGDAPASLTLIDTESGETEPLFGKSELAPGKGGLLSPVPVVWIEQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0167631_1000001

Overview

Ecosystem & Geography

Associated Families

Sequences