NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120098_1008985

Scaffold Ga0120098_1008985


Overview

Basic Information
Taxon OID3300015170 Open in IMG/M
Scaffold IDGa0120098_1008985 Open in IMG/M
Source Dataset NameFossil microbial communities from human bone sample from Teposcolula Yucundaa, Mexico - TP48
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterHarvard University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1061
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Fossil → Unclassified → Fossill → Fossil Microbial Communities From Human Bone And Soil Samples From Teposcolula Yucundaa, Mexico

Source Dataset Sampling Location
Location NameMexico: Teposcolula Yucundaa
CoordinatesLat. (o)17.550556Long. (o)-97.425556Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000573Metagenome / Metatranscriptome1016Y

Sequences

Protein IDFamilyRBSSequence
Ga0120098_10089852F000573GGAGGMGAWLRRIVVSIGIGGMSYLIMLGIMVLSVVYDRELEPVVTYAFDTGRSIIGALDTLVSGSHWGQVAVNHLRERVNMTHVVLSIPAIIIATIVFGIPFNRLLGGTRTALQRISIALVSIPSTVVLAVVLFSFNALWPDAYAGLLRFADWVWQVSLNGLSASGDTIPGARKLTNAARQGFSGHHYVIMALCSMVASFLVNALFALATRKREPDPRWA*
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Biomedical Sciences Research Center "Alexander Fleming"
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