NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167668_1002857

Scaffold Ga0167668_1002857


Overview

Basic Information
Taxon OID3300015193 Open in IMG/M
Scaffold IDGa0167668_1002857 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3734
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRabots glacier, Tarfala, Sweden
CoordinatesLat. (o)67.872223Long. (o)16.713705Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000530Metagenome / Metatranscriptome1047Y
F016558Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0167668_10028573F000530N/AMAEEVDSKAAAAPRGEIKTADRPFRVKLRGSVLAFVRLPNRRSVRAAFHQLSTSGGVVHLEKPLDEKLEVELIFHIREDTIRGKAQMLFPMWATQGWMQPFRFVDLSEANRNILDTSLKSFLGDAAKGTAAAGS*
Ga0167668_10028574F016558GAGMEILTPKATRRSTRIRVEIPVSVTSLDRTRPFADKCMVLIVSAQGCGFRSPRALQMETPIMISDLPGGGSVTGRVANCLPLGDDGKYFLIGVALYTHGNVWGVSDPPADWNVAAQAAAASASGSPNNGTANEATLTVNKNKKVWPYNVFTGGVENTSKRK*
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