NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167668_1101859

Scaffold Ga0167668_1101859


Overview

Basic Information
Taxon OID3300015193 Open in IMG/M
Scaffold IDGa0167668_1101859 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)529
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRabots glacier, Tarfala, Sweden
CoordinatesLat. (o)67.872223Long. (o)16.713705Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017104Metagenome / Metatranscriptome242Y
F066943Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0167668_11018591F017104N/ASYEGGIVSRYAEIKRATAQVVGVRVVRKASTATAHAAIRDVIVGNPTLSYQQIADLLGCSRWLVYKVAVEFDIRRTRGAGSPARRKEEQ*
Ga0167668_11018592F066943AGGAGGVKRRKYFDWEQAFHFIFENADRDGIWLGDAASLAAEFDVSEDAAEAVFDELRARRLVEKLYTGTFFISKWREREDTRCYDE*

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