NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167658_1000538

Scaffold Ga0167658_1000538


Overview

Basic Information
Taxon OID3300015195 Open in IMG/M
Scaffold IDGa0167658_1000538 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20197
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (45.45%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.865505Long. (o)16.714941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034274Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0167658_10005381F034274GGAGMVSEMPSLAVLIAVLAFAPAASAWTTLTGGVGNTVVPSIILTQAGSQLVSWEAPVGGTISVSRNNASGKTIVSGDPVPGRTQLVQQPNGAIQLYFPSAQGAARMTSTDDGQTWTGPIQTQSHTTGPVQAAAVAPDGTPYFSQDSTAGVNVFRGLNGESVKNVFPRCCGYAESLAVDTTGLAQVAFYSNADPDGTFLYEKLGADLSPAGSTALKPTEQHIDRVPLVADHSGTTFLAWPPGNPATGVTVVPFRGGSPAGDGFDFRGSFVGGDPHMALAVDTKDELWIVWTGGGAVHAARSRSHGQHFGAAVSVPVTGTMYQVSAAGIAGSPGTVEVLVNTGSNLIQQALQPGLSVKVTRKLKKVGKKQIVTRVVQALDDGFGVPAAVFKIGGRTIHANSSGTAKVPAGSGKASAPGYVGASFHVR*
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