NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167647_1098828

Scaffold Ga0167647_1098828


Overview

Basic Information
Taxon OID3300015199 Open in IMG/M
Scaffold IDGa0167647_1098828 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2c, rock/snow interface)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)729
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.899244Long. (o)18.344371Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037998Metagenome167Y
F055264Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0167647_10988281F055264N/AETLSSISNRMNMGNRTGLEAEAINRLTDDVQPPMMRAILVQCLAGDIASSAAISRMLAEGPVSTVRAAIDDVTQRAATISRASDMLVHDRVDELTQVFVENVSALADVSGATKTRSAAKAARKARSDRASESGDRGEPRISE*
Ga0167647_10988282F037998N/AGRRPRQLIVVWGFSMLLMLLINWLETQAPALHELVLPFYWIILAVAFYLTWRWLRARSKKDRRGADRRHVERRDENESPGSDN*

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