Scaffold Ga0167626_1008976

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167626_1008976

Scaffold Ga0167626_1008976

Overview

Basic Information
Taxon OID	3300015204 Open in IMG/M
Scaffold ID	Ga0167626_1008976 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G2B, Ice surface)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4951
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell Glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.163011	Long. (^o)	-50.018445	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045483	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0167626_10089767	F045483	GAG	MAKPRRLVSGLSVLGFSLFVLTGCVVPGGYDVNSLHLQPEAALVYPGSTDVHTNYYNGSPGNYVSKGAVASIGNLATTIHTQLEVLAFFSKTVTADGWTQNGKSDQETTPEGLPASTISWGKQSLHLSYSVEAWTEGETTKYWTRISSDE*

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