NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137409_10021713

Scaffold Ga0137409_10021713


Overview

Basic Information
Taxon OID3300015245 Open in IMG/M
Scaffold IDGa0137409_10021713 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6314
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014657Metagenome261Y
F060301Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0137409_100217134F060301GGCGGMSQRLTGFDICLPGIVAGLTLAAVLLAMGEVEFPDPFRQVFPRQTLVLLSVAIGAASAVGLVSLFFHSRGDEEKPRQHISSNDSKNKNALPSGGTDAF*
Ga0137409_100217137F014657GGAGGMKHLITVALIALMLTACGKREEESEVVPPGFCKAEAECQPTADRQNQTQEQLRQDLMAQGVHEQYLPCGKYKTAKAPNGFWQVTRDTAGCPPTASQQDPHPELGKAKKSAK*

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