NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137409_10219104

Scaffold Ga0137409_10219104


Overview

Basic Information
Taxon OID3300015245 Open in IMG/M
Scaffold IDGa0137409_10219104 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1705
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038167Metagenome166N
F054748Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0137409_102191041F038167GAGVIGWLNKGRWLLAALALVLLASITSSTHAAAPSPQENVSLYAGNRLIISSTQHAIKSVIVRGNLTAATVSNVSYPARNFTLTTNSTELYTLNIWLSYPSTYTTAIMINDPRAGSNSQ
Ga0137409_102191043F054748N/AEIATGRTETNDVVDAISETMNIVADLHEVEKYTVQQVESCERAAESALNAIRPGLKVEQRRISGKVMVTSLHGDPHTFDKTLLLTMLEMGGFSALDGGEELSPEEVVRSVKRLKPDVLAIPLVSPSSVNDLLRTRSLLANSGVKTKLVTYGRGVAKLPSDSQLSAMEEDSLSILSRIAEILISL*
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