NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180073_1127900

Scaffold Ga0180073_1127900


Overview

Basic Information
Taxon OID3300015256 Open in IMG/M
Scaffold IDGa0180073_1127900 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT333_16_10D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)548
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9226Long. (o)-106.9518Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002465Metagenome / Metatranscriptome557Y

Sequences

Protein IDFamilyRBSSequence
Ga0180073_11279001F002465N/AMPTNPPPKPDLSEEMTERRIAEFALEESRLSNVAYRFRLSPRDRVWKNWDRTEFEPNHYRVLGLAGVCISRDEAGEAQRMASRALADVDDILYTVERPAQAVIVRGAGGTSEIINRPTLCIEIFAPNGPAFDSALAALDSAFPGGRVAGKILSEE*
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