NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182007_10199998

Scaffold Ga0182007_10199998


Overview

Basic Information
Taxon OID3300015262 Open in IMG/M
Scaffold IDGa0182007_10199998 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location NameUSA: Nebraska
CoordinatesLat. (o)41.1591Long. (o)-96.4086Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085982Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0182007_101999981F085982N/AYFVMRKELRENHYLSGEANPSYTKIFPDVDFAPAGYWFWLKSSEAHGFDIKAFDEKHIYIRSTELNWKDNTTFKRKQEDTPLTTRCVPVNAASPVLRISNARFSFYANCKLYKTSSLGTIVNNLDAPEMMDAGGDIGQVLTRVLHYRFNCDKHFENCKDEEQSFLSKGYGRWKWVHLKYGEVVKTTVANHISKGTAHAIPPCQNAYR*
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