Scaffold Ga0182005_1020390

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182005_1020390

Scaffold Ga0182005_1020390

Overview

Basic Information
Taxon OID	3300015265 Open in IMG/M
Scaffold ID	Ga0182005_1020390 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1824
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location Name	USA: Nebraska
Coordinates	Lat. (^o)	41.1613	Long. (^o)	-96.6752	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041209	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182005_10203902	F041209	N/A	MRRKLQKIATARILFLDETALRLSAAPTHTIVLPGEQPYVLATDTSSYAARYDMIAVCTGVETLLPKVFTPAERRGAAVRGVNSAMLQQFIDDTLAQAVEGLDRYPLTLVLDQASIHKNVDAIRQAFHDRGSQAIKDILLMPPNAAKRMSPLDNALFHDWKEICRQRCPVTKRTIQQVMADAWNKLPARLLHAHYKKCGLVRGQDPYFDCPDPAGHQHAS*

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