NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182101_1029542

Scaffold Ga0182101_1029542


Overview

Basic Information
Taxon OID3300015284 Open in IMG/M
Scaffold IDGa0182101_1029542 Open in IMG/M
Source Dataset NameSwitchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)751
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000492Metagenome / Metatranscriptome1078Y
F019591Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0182101_10295421F000492N/AMKLGAKRGELVQLIQKFVP*SHIGIFRNERTQSAPLDRKLM
Ga0182101_10295422F019591AGGMGWIGCVRCEKSRCDFVA*TLALIAIVHPILHRVSCIYEMIPNAPKHYTTHPNMSSGSNGADWVRSLRKIRT*LRGTNFFMNCTSSHRFAPSFMQLQNHNKCTQTQ*NL*KYEFRVQWRGLGAFIAKNPDVTSWHELCINCTSSPCFASSFMQLRNDPKCTQTLYNTPKHEFRVQWGVLGAFVVK
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