NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182110_1030296

Scaffold Ga0182110_1030296


Overview

Basic Information
Taxon OID3300015322 Open in IMG/M
Scaffold IDGa0182110_1030296 Open in IMG/M
Source Dataset NameMiscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_09MAY2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)772
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010293Metagenome305Y
F033654Metagenome176Y
F052306Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0182110_10302962F033654GGAGMTDKVDRTLVRTGDELSLKAKENFCIKSTSWTKSAIFFLSIGNISLSRFLVSSDKASLEEAADELISSSSRYSSRLKEYLGARRLSTYI*
Ga0182110_10302963F010293N/AMFVDTNIESLEPIQLDTIGASSAIPSSHIEAIPEKVSYLLRRLSYYQPIQSS*
Ga0182110_10302964F052306N/AGIKDDPIVVDAQTIDSPVQHTTDGKKIIYLCYPSATIMN*
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