NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182147_1059067

Scaffold Ga0182147_1059067


Overview

Basic Information
Taxon OID3300015333 Open in IMG/M
Scaffold IDGa0182147_1059067 Open in IMG/M
Source Dataset NameSwitchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)764
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000698Metagenome / Metatranscriptome930Y
F004472Metagenome / Metatranscriptome436Y

Sequences

Protein IDFamilyRBSSequence
Ga0182147_10590671F004472N/AMFGCLTKLGAKRAELVQKFVPRSRVGIFHNERTRTTPLVPKQTFWCVSYYLGAFGTV
Ga0182147_10590672F000698N/AVHSGPFGCLTKLGAKRAELVQKVVPQSRVRIFRNERIRSTPLDPKLTFWCISYYSGAFMAAWLLTKLGAKRAELVQTFVPGSRVGIFRNERTRSTPLDPKLTFWCVSYYLGAFGTIWLPYETRCKTGRTSAKGRATKSRQNFSQRTHPIHPIGP*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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