NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182109_1151551

Scaffold Ga0182109_1151551


Overview

Basic Information
Taxon OID3300015342 Open in IMG/M
Scaffold IDGa0182109_1151551 Open in IMG/M
Source Dataset NameMiscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_09MAY2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)584
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010223Metagenome306Y
F022336Metagenome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0182109_11515511F010223GAGLHGQIDADEAKDRRFFVEAINKSVHDAMPNHNEVLLNTFHNTMTEVFHGYPIDQVGPAYYNIPHPSTQGTNQASTSHQKVASAGNDDVQVV*
Ga0182109_11515512F022336GGAMVAYNKNDILMVPYEDLPDGDKDVISKAIEEFQSKCLLSYTKT*

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