NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134073_10026945

Scaffold Ga0134073_10026945


Overview

Basic Information
Taxon OID3300015356 Open in IMG/M
Scaffold IDGa0134073_10026945 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1422
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012567Metagenome / Metatranscriptome279Y
F031219Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0134073_100269451F031219N/AVGEDDADKLLPGEASSAHSGDVDDARRWIETYDELCRLKQKILTDLESQKVRVPPEGDAEVKDDEAMLRAEYERLLGRREFWHAEFEARQDR*
Ga0134073_100269452F012567GAGMSIAKSHALMFQSELLLLNAANHSYRRTRTRKDLKRVEHFRSELNRTEAALRRTGPDELALENGDFWLQIYADLIDCATASLDRMRSGMSSREAADRFETATDVQMLEELLAQWTSRMQLIRQSTADGGHDKV*
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