NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134089_10007316

Scaffold Ga0134089_10007316


Overview

Basic Information
Taxon OID3300015358 Open in IMG/M
Scaffold IDGa0134089_10007316 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3443
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013625Metagenome269Y
F074652Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0134089_100073164F013625AGGMLLLFVSFSLVYSSIAYYSLSRPPAQEFMAWGVFSSSSSLSNYFSGAGANVTVGETLNWHFAVTNQMGSIQYVQVVYRLGNSTSANPNATVPGSTVPQVGKSSIFIPNTQTALVNFTWVISSRNIVGGMVFITTMINGQQVSPSVGAVAGQRFRFFFELWTYDVALNSFQYGYKGQNSRVGVPLQVWFNSL*
Ga0134089_100073165F074652N/AIEDEPRRRLWTALGLASTPIFVSSHPETPLAMSLGLAGFLALSLLKSRRTFQLQTLKIALPLAVLIGWVFFWWGLVAVDARNLVQTSILDRALISFSRLPLGITTQTSNVPAVPSYSYGLTTLSEQGISAIIWATGLAYFALFRRLHPRELFLGGLFLASVSTIPIAVFGRADVLQRSYLFALFPFVILTAWLLEQRTVLTLRGRNLFRLVRVGFIIMMVLFSAIIPLTRYGVDPIEYISGSSFFVSNISAGLTQRHSLLFFHPDEDGWRFYAGIGGAIREPRLEQKNLANQAGGFVKPGTDPTVPGFNLTYTTSDNSANYIVMTSYWQNLYALRFGSNSAFYIQARNNYTTTVIRNFNLVYSTGTDQIYVNQELG*
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