Scaffold Ga0134085_10114711

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134085_10114711

Scaffold Ga0134085_10114711

Overview

Basic Information
Taxon OID	3300015359 Open in IMG/M
Scaffold ID	Ga0134085_10114711 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1127
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: Angelo Coastal Reserve, California
Coordinates	Lat. (^o)	39.7181	Long. (^o)	-123.6527	Alt. (m)		Depth (m)	.2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013177	Metagenome	273	N
F045649	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134085_101147112	F045649	AGGAGG	VTDSRIILRLALGVLCGVVLVLLPAVFSAGPTANPSTSSTQNFGRASGPVTLAPAAASFFGLDNATLGGLSLLTIILFIFLPSTIFSILVRRWAEKKAHDYLE*
Ga0134085_101147113	F013177	AGG	MFFNILGGSLTLLSVQLPWMTINGTYPVSVESGGIFAVIFYWALAGAILSFLSRFGGAMTLVGLIGFMGEPYISYRLANPGLGVLLAFAGAILTFAGVRWSIPSEIVRGHEIVGGILYSVGFLIILTIVISSFIYGGLSATGSSQLIVGAPLLLVGILMTGLGLKLFLAPERRKKLSAY*

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