NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134085_10126834

Scaffold Ga0134085_10126834


Overview

Basic Information
Taxon OID3300015359 Open in IMG/M
Scaffold IDGa0134085_10126834 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1072
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000531Metagenome / Metatranscriptome1046Y
F005261Metagenome / Metatranscriptome406Y

Sequences

Protein IDFamilyRBSSequence
Ga0134085_101268341F005261GGAMIIGVRSAQQMTWDRSEAFQEDHMGRKVELLAAKAGAVEGEGAVEREGLKLAQDLPLKEQVIFTGSSDWTPEQAEHYIDWRIQSVDTDIARLRQQLDDLIAQRKRWLAVTGGRSKVFGV
Ga0134085_101268342F000531GGAVDAFSPWPGISLTYRQFGAELGTPVTEAAIKKWPQRKKFPADVARLIVTRARQRGLVGVTLEWVLWGDGPGPEKGPDGAEGRSTERPAERDKRDAVGLKAVSQEPHGQFAARIAQALQADLSHNEFGQWSSAEVQHTVIWALKDLARRLRVLQFDMGETFELTD
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