NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0180009_10277271

Scaffold Ga0180009_10277271


Overview

Basic Information
Taxon OID3300015370 Open in IMG/M
Scaffold IDGa0180009_10277271 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PC_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)710
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location
Location NameSweden: Oskarshamn
CoordinatesLat. (o)57.4344Long. (o)16.66Alt. (m)Depth (m)448
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042954Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0180009_102772712F042954N/ADVDLRRVDPSERKRYEIKQLWQRSHEIINLTARGFKEVEVAEILGITPACVSMTLNSELGQKKLSDIRFSRDEEAKKTSEKIRILTAKALQVYHEIFDNEDGQASLKDQKDTADTVVLELSGLRAPTRIQTSSVSTILTADEIKAFKERGRKAAEEVGVVIDVTPINGGEDDLVPSPITNPPSPIMSEVTG*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.