NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132258_10072176

Scaffold Ga0132258_10072176


Overview

Basic Information
Taxon OID3300015371 Open in IMG/M
Scaffold IDGa0132258_10072176 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 and col0 rhizosphere and soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8010
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002246Metagenome / Metatranscriptome578Y
F003993Metagenome / Metatranscriptome458Y
F039901Metagenome / Metatranscriptome162Y
F046604Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0132258_100721763F002246GGGGGMSDDDETHLHVTYATHLDMDDAFSNRMCAAIAAGLESAPIGVVTTPGTKNPKYLATEPRPLVSSHRAIECA*
Ga0132258_100721764F003993AGGMRRQGIEDVKGKTPVLEPSKKPRRKVSKAELRYQAEAAVLAWRAAQAAKDK*
Ga0132258_100721765F039901AGGAGGMNTPANPPEDVIVDTRYIYTLALALVGLALATSAMLFLFIDF*
Ga0132258_100721766F046604GGGGGMRSILACALLCAATMQAGAQYPNGLFVDGNELMTWCGPHNVAGPSDPLCLGFVAGVSDAANFSRQLTRRSSNTNCIPPGTTIVQEANVVVNYINRNPDKHDLPAAALVVAAIDEAWCSQAIRSTER*
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