NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132258_10316781

Scaffold Ga0132258_10316781


Overview

Basic Information
Taxon OID3300015371 Open in IMG/M
Scaffold IDGa0132258_10316781 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 and col0 rhizosphere and soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3843
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005316Metagenome / Metatranscriptome405Y
F008771Metagenome / Metatranscriptome328Y
F009707Metagenome / Metatranscriptome314Y
F028104Metagenome / Metatranscriptome192Y
F036898Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0132258_103167814F036898N/AMGEISVSGRLRIFLANRLIALGWALKGSCKPCAHRLFTTVRWLVPEAQRFLIQRIGSHGSNRRIFEWLLSRIQPRVVGGFLIVLAFVGLLDVAMRATSTDVENSAFLSASKSTEGMQAFVSETASISEAQIAPVPLPLRKPERVYKVPNGKGAKANLATQKRMARQKTALPKRRR*
Ga0132258_103167816F005316AGGAMLAGRLESEQTALQMPTIYVSDRGDDKNDGLSLQTAVYSLERAKKLQGGRSDYSWHFGPRAWERIQRELSERQKGKG*
Ga0132258_103167817F008771N/AVFRVAVQGSDIVVTAPDTDYVMTYHKPINSCQLIAKSFPRKEDRRVSMTLADFLTAAYKLANDKAREEGWIA*
Ga0132258_103167818F009707GAGGMTEQPFLNSGKEWSKKDLFSLQNRIEHGRTIAHIATFLMRTEAEVREKAVELGIEIK*
Ga0132258_103167819F028104GAGGLSKSESAYFNVEVRDGNLVISLPNGRFKATYYKPAGKSHLILRERTKTDDEAMVADALQVAVRRARELGWIV*
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