NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132258_11207524

Scaffold Ga0132258_11207524


Overview

Basic Information
Taxon OID3300015371 Open in IMG/M
Scaffold IDGa0132258_11207524 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 and col0 rhizosphere and soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1912
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013520Metagenome / Metatranscriptome270Y
F020740Metagenome222Y
F098318Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0132258_112075241F020740N/AMVVGALVIHKIWFREEAKPVAIENKAPVAKEDKAPAVNKADDAGSQTDESGGKRGLTPDCEKELRHTADLLRFFANRIQMGEKTQSVVADMRQQEKKISA
Ga0132258_112075242F013520GGAMHPAETYRRRAERAERACENARNPEAKRLARIAAHRWHELAELAQRQETEGPPIPVRFRDASEAVHYAQDHKFALYWKGTHAFAKRQRELGDRFVARPVFTCKGATYVGLVPLEERENASGEEPA*
Ga0132258_112075243F098318N/AMTRYKARTSQKGIERKFPHVVEIVVPPGGLGGQLDAMHYFHHARGVQACLGLGRRDKEGRDYLRWYFTGAKMAVSFATEFGGKVINPPYRSHRRRARRSAPSL*

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