NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0132258_11289909

Scaffold Ga0132258_11289909


Overview

Basic Information
Taxon OID3300015371 Open in IMG/M
Scaffold IDGa0132258_11289909 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 and col0 rhizosphere and soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1846
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079036Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0132258_112899091F079036N/AMMKLFHSSLRDHAGNGKPALLLGCLIWLAATSFSVAGAFQPNPRAGVGSVIVHGKLGGLIFGFEIDPDGTEGLLCEAVPNFDGTVTAAVETFNQATGRIIRILGKTNTQDDLIAWTVAGSVGLIEREKVKGLFTIQRTFSVIDPLSGNEINGNWTPPIDHKQIVNQVKPAFDGSPNVAVYALSVSTSLNPVVFSSNLRDNTFGPAIEITDLNFTTEAPPVIAFDPIRNQAILGHDKPSPFIEPPLIGFVDLATGSFDVKTGLGLGVINGVAVDT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.