Basic Information | |
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Taxon OID | 3300015373 Open in IMG/M |
Scaffold ID | Ga0132257_100860933 Open in IMG/M |
Source Dataset Name | Combined assembly of cpr5 rhizosphere |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1134 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina |
Source Dataset Sampling Location | ||||||||
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Location Name | University of North Carolina | |||||||
Coordinates | Lat. (o) | 35.9 | Long. (o) | -79.05 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F005277 | Metagenome / Metatranscriptome | 406 | Y |
F020740 | Metagenome | 222 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0132257_1008609331 | F005277 | GAGG | MRFVIPAAAMLLLSGFTQAELEKAKNTKEFYKDGYWKCLATEILRVVPTNMSAQEFSMFVKRACSKERNDFFNSLSNYIVMLQPDADRDTVVSAVNIAILEAQKDAVEALNDLRSGKRKM |
Ga0132257_1008609332 | F020740 | N/A | MVVGALVIKKMWPREEAVTMEDKAPVAKEDKAAVDKAVNAGPQTAIGKRGLTPDCEKELRRTADLLRFFANRIQTGEETQSVVADMRQQEKKISAVCD* |
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