NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132257_101873571

Scaffold Ga0132257_101873571


Overview

Basic Information
Taxon OID3300015373 Open in IMG/M
Scaffold IDGa0132257_101873571 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 rhizosphere
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)771
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010932Metagenome / Metatranscriptome297Y

Sequences

Protein IDFamilyRBSSequence
Ga0132257_1018735712F010932N/AVSRKPGPSADTEYIDEKSFALPSILQIGDTEFTHFRQPREALSAGSHNAHFMFVTPNDDHSFTLFTVNHYTGSDPEFFQKLAPSRKAEAMAEKKPYDRRKYSPFRGNVRTEDITCQSTQPLLDRRKEQLATSDKGVILIRKIILNAMRAVQEKRAPKGLPRREQAHEMVEIDSFTGVRAKEIN*
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