NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0132257_103110874

Scaffold Ga0132257_103110874


Overview

Basic Information
Taxon OID3300015373 Open in IMG/M
Scaffold IDGa0132257_103110874 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 rhizosphere
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037297Metagenome / Metatranscriptome168N

Sequences

Protein IDFamilyRBSSequence
Ga0132257_1031108741F037297N/AVSVYSDTFPPGPAAYCQSDGSTAGLICGTGLTFQATGRALYVTAGPEWKIRRGKRFAPFAQALVGVVSTRSTFMMSGSDVQYTNPFTGGVLLFTSAGFPQDRSLHYADAHADAGLALAFGGGVDIRLSKRIGLRPAMDYDPTFLVRPVFPDLTPDAQGRVHLQPAPNERHRQDHVRLSIGMVWHIR*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.