NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132255_100008509

Scaffold Ga0132255_100008509


Overview

Basic Information
Taxon OID3300015374 Open in IMG/M
Scaffold IDGa0132255_100008509 Open in IMG/M
Source Dataset NameCol-0 rhizosphere combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11844
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096991Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0132255_1000085095F096991AGGAMLPHAVAGTVLLPLLNSTKLLAHPSAGSSGSVENCWLDVCAPLVVQNAELGLYSEVVLTSDTFVGQAGYSDGADTTEYEIYLYDSSGNAIGADGVAKRLVVPAMHTTTIDLKEVLGGQKGFWGGMRIRLRPKGRAPMHASDLFSSAFVRWKTDTAFDNVHANPDPIEWQRPDPFFYSMPFPPLNEYDSLFSLFNPNAQESVGEITVYDALGQKLAQTAYELKPHASLLFDLGRGEFTDDPRPGFGWDSKQRSPHAVNSNGGSVVVTNHKGSQKSFAYLMLNRRGGVRFTVEHPIHQPPFNPVSAPPPFDGAGRLKAKNILFTPLVFRAKRIGSLTLDSRFHFSSGAPMEEFLWLSPFITDGEGAVAWQPSVAAKYPTSIAPTQIERSAIKLAGMQSCVFNCTELPLPKTFSGGMSLPVAPTTNHTLMKVEVSVKEWNAHAFTHFRPGLQSARGYQAATPRGTLATDYIACNARLEKRGDKIVRDEVIGVMNIDDKAIAGRPMLEVHSAQGLFARIDLGEVPSFACRHYLLSEIASEKIPPLDLSLRLVDEHATLLMSVAHLDYARRDLALDHGSDRFSTFNDFTCHATS*
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