NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132255_104716677

Scaffold Ga0132255_104716677


Overview

Basic Information
Taxon OID3300015374 Open in IMG/M
Scaffold IDGa0132255_104716677 Open in IMG/M
Source Dataset NameCol-0 rhizosphere combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)577
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter palustris(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028177Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0132255_1047166771F028177N/AVLRDVMGEEDVPTGTSDEPLFKWRKRTRLFQQVVVGLDTMLERWDTASQANQKKLGLVTESVEEVIKLTENAVTEISKNFRIVVAKANEQTEAAMSLLQGEGQNTGILSLPEFIKAYDSQLVNVTSHMTSFSAAADEMAQHQRRVSEHAKVMEETIDGLRAMANQIARIALDSSVAMTSQTLNPRDFVEMTD
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