NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182036_10036571

Scaffold Ga0182036_10036571


Overview

Basic Information
Taxon OID3300016270 Open in IMG/M
Scaffold IDGa0182036_10036571 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2976
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001824Metagenome / Metatranscriptome630Y
F003295Metagenome / Metatranscriptome495Y

Sequences

Protein IDFamilyRBSSequence
Ga0182036_100365713F003295AGGAGGMAKFMFVTFSLMAEITDTDALREAALKKFDTADMTSDDYPDTADWHASEEGQEERRQVATQDRDALNRFVDPAKASGLLDGVPGVKAVILGSSVGELTGTTQDEARDAWANREGITWWPEARDAERARQHREGTT
Ga0182036_100365714F001824N/AMARDDSWPQALRVLRVASLPVLDEARPAGMLGWVPRVAPVVTQVTVGAGHWAAGRRRRALAAWTSAAGYGLVAWGLGTEAPTPAEARQNWEQNIQRLQSEGLLPEPGPKAPAAARTPTPAGRRMERHFERHISRYNAFFRAAQTPQYKLASTVVGVVIGVWWGLRWPRRLTVLAIAVEAPNAVIHVPWMARAVQRRRPRIAAGWALVAAASVARLRAASAEPLR
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