NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182036_10454839

Scaffold Ga0182036_10454839


Overview

Basic Information
Taxon OID3300016270 Open in IMG/M
Scaffold IDGa0182036_10454839 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1007
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F006905Metagenome / Metatranscriptome362Y
F045282Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0182036_104548391F045282N/AVTGIHADIDALKGLHGALVRYRHAQREVTAWGEDQLRVTRASLEAKAGHCRTQLELNQAELGACQDRAAREAADETAGGPGGCSGFARAVGQC
Ga0182036_104548392F001698AGGAGMAGVINDIEALAEFRAHLMRFNHDLAENFATIQAHWRELGEVWRDDMYRLFGEALEEVTPGIATYLSATEGHEAHLAALIERLSGYLETGAGAGLGVGRPPEAGRSPGNGTGKRAGSA
Ga0182036_104548393F006905N/ALRIQLGREVWETHREPLRAVSNDMGTAAIEPAISALRAVLREVPEEYPDRNREVNRFLPPLASAIHAIMKEQEADIPYHSRVEHIATGGVAKYPEIVKTSLDELAAEFEGICRRPGETSA
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