NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182036_11179882

Scaffold Ga0182036_11179882


Overview

Basic Information
Taxon OID3300016270 Open in IMG/M
Scaffold IDGa0182036_11179882 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)636
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001481Metagenome / Metatranscriptome687Y
F003919Metagenome / Metatranscriptome462Y
F031185Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0182036_111798821F003919N/AKRRSAFLEELIASTPNVSVRAKEFRRWIDENSPCSDNDEA
Ga0182036_111798822F001481N/AVDLESSLDEDWPPHQPITLTDLVAEARAADWDFTNWCYASGYDASDPDARRMFERLLAYARREGRAGLN
Ga0182036_111798823F031185N/AMLKTLIIATVLLPKLAIAEQSQPLPQPRQPGQWCPVGWMASGSYCVLGSDKAPAAISKNG

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