Scaffold Ga0182041_10364739

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182041_10364739

Scaffold Ga0182041_10364739

Overview

Basic Information
Taxon OID	3300016294 Open in IMG/M
Scaffold ID	Ga0182041_10364739 Open in IMG/M
Source Dataset Name	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1218
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028383	Metagenome	191	Y
F037519	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182041_103647391	F037519	AGG	VRRQQLLIWAAWLVYVAAWFLPIVKEGVTLPGGLPGWQAFRVATCAVWSCADISIDKWHKTALFTTSAVTTLLFVPGSVWAVWGGSRALRRPSAWIATLAFVVNAHWYVLYGGSARQDLRIGYFLWWLSFLLLALGPFDLSRPEAGKR
Ga0182041_103647392	F028383	N/A	LYSQHSMKLELTKHLDKVRATVTEVDRTVSSHKYPSDRRTVMVMGLLSTIIQHHPSMLHLIKSAGTAGSSWALARDILKGTRYGLWINPCATEEQILQIEEADELPFSIPEVIKEIEAAYRTDRFFEGLKNRWGTQLYKYSRSDIFELGCWEIDASSGLHLDDGEIREATTIATLCIVLLAGKFLSGQGHSADCEQIETLAEDYATRAS

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