NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182041_10609626

Scaffold Ga0182041_10609626


Overview

Basic Information
Taxon OID3300016294 Open in IMG/M
Scaffold IDGa0182041_10609626 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)960
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021257Metagenome219Y
F026956Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0182041_106096261F026956N/ANAVGHNLWAKSLEEARNPHSRFDITRSAWTPVQIAVTCEGIIFAFAGREIVEIVGNGKFAEAAPYIPALFVIALIQTTEQPANAVVCAFGRAAAATWTRTILAVGSFIALYPAIVLLGIKGIIAVCIIEAVVYRLYLRLLASRERKVPFQDHVAVFGCFAISAEIIYIHWTMPALALQLVLTAASLAMLFVIGRRSVGEMISAGRQMVIGRPA
Ga0182041_106096262F021257N/ASLLLAMDREFTSRGIRLIDWSAAVANVVGGPAEVPRLHGFGVHKGAGHLNYDGHRAWATALIDVLRRAVPLGAAPEDSAPATHADR
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