NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182041_11135236

Scaffold Ga0182041_11135236


Overview

Basic Information
Taxon OID3300016294 Open in IMG/M
Scaffold IDGa0182041_11135236 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)711
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001529Metagenome / Metatranscriptome677Y
F006631Metagenome / Metatranscriptome368Y
F025195Metagenome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0182041_111352361F006631N/AAMEKHELSKIDFEIIENAFNSLLQAHPDPMTADKVADLRDKFRDAFTGWLEIEEAA
Ga0182041_111352362F025195GGAMRRLDEYKKHAKDCRALAAMVTRPDDKLILEEIAKAWEEVATLRERDLPEADE
Ga0182041_111352363F001529N/ALLDKQMRRLTPPRHEGVIALMLAAMFLVGMTLGGALSPHQSAPTQIASLD

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