NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182035_10201890

Scaffold Ga0182035_10201890


Overview

Basic Information
Taxon OID3300016341 Open in IMG/M
Scaffold IDGa0182035_10201890 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1573
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001064Metagenome / Metatranscriptome789Y
F028246Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0182035_102018902F001064GGAGMAQAWLRLADNYEARPVVQQQQQIQPKKGDSYPSARLRTRSLPHLRHSITWNCTRKGEGCMALRLCDVERDTIANRALNELMHHYSVAEEKDSLILTKKAGDMTLFLHDLDDLHQLDFVKNKQMAKEIERLRRSEQQRESWKIRALMAEAQLREATTKISNNGACHNVTDVRYASLKRYLAKQFHPDYAPGRGIEKIVRNEIFKEIWNEIERLDQGISAARLAMGRSSSAA
Ga0182035_102018903F028246N/ATLTDLVAEARAVDWDFTNWCYTSGYGAGDPDARRMFECLLAYARREGGAGLN
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