NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182034_10137786

Scaffold Ga0182034_10137786


Overview

Basic Information
Taxon OID3300016371 Open in IMG/M
Scaffold IDGa0182034_10137786 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1814
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005436Metagenome / Metatranscriptome401Y
F032341Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0182034_101377863F005436GGAMPRLDVLDEEFGEDAAAVLHARRRRIGERLLMLAIVALGLGAIGALAFAWSNTDGPLRFELQSAATAPKSAQRAAAQEEIERLQGELDALKNDVKELTEAQHQAALTIATMKAGEEDLRRDVPAPYWYSNPATLDLAIANQPQWAGVAPPPRRPATARSESRGLRKREGAAPASRVSPQ
Ga0182034_101377864F032341GAGGMGNCHLVAGRSLIDLVASRLALRAPALRAATTLTR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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