NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182034_10199159

Scaffold Ga0182034_10199159


Overview

Basic Information
Taxon OID3300016371 Open in IMG/M
Scaffold IDGa0182034_10199159 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1547
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005439Metagenome / Metatranscriptome400Y
F015282Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0182034_101991591F015282N/AAIQADRNLANRAEIATDIDPRTGTPALVFDGGAGHYQVVAGAAPENLEYHKLTGALATGKAPLILLTLDVRLNRPNYPTFVDLDFRGPDGGPASTSWNFRCWTEIQHPAIDANFTLAGAQNGNGVILSGRAEKAPVGPVSDIPGPVTLLGLVPADEGRGGRTMDLAYVVQRSDNSKPTTVFVPF
Ga0182034_101991592F005439AGAAGGMKFRTKGARLAGLLVPALALAVPAFAQVRDPKLSDATEPGSVIVFPKFINGSGVVLPEGVPAPVTELEVGVVCPKGATCSEHQPVKIRFHWVCGTTEANLAGSFICSETDFDVTATVFEKIVLVPDGTPQNGYASGLPTKTIPAAPCLGGYLIGWVITPTTDTPIKFDGLIGDAVIRSSATAQAGYNAIPIQADP
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