Scaffold Ga0182034_10405245

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182034_10405245

Scaffold Ga0182034_10405245

Overview

Basic Information
Taxon OID	3300016371 Open in IMG/M
Scaffold ID	Ga0182034_10405245 Open in IMG/M
Source Dataset Name	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1120
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002914	Metagenome / Metatranscriptome	521	Y
F046585	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182034_104052452	F002914	AGG	MDNTCQHCGELIVGNAYRVTSEEEGITLLDMIVCSLCFMEAKRLRLHTEEINIKSKQPSARTRGSHRSRLGI
Ga0182034_104052453	F046585	GAGG	MKELTIEELTTEAMQLLPLGIDDLYMALGCQLLASEKPKRVAGIISYLSAAKKAQQARNLYATLPSKPDTSDWEEGIDLICNELKQDGVRFLDEIRPELQKGVCNEDILTLADDINGSSMQILVMIVGAILKMPPQFESISATLAAILCKSGLRDFCR

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