NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182040_10188161

Scaffold Ga0182040_10188161


Overview

Basic Information
Taxon OID3300016387 Open in IMG/M
Scaffold IDGa0182040_10188161 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1507
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F008441Metagenome / Metatranscriptome333Y

Sequences

Protein IDFamilyRBSSequence
Ga0182040_101881613F001698AGGAGMAGVINDIEALAEFRAHLMRFNHDLAENFSTIQGHWRELGEVWRDDMYRLFGEALEEVTPGIAAYLSATEGHEAHLAALIERLSGYLETGAGAGLGVGRPPEAGRGPGQRAGARDGPA
Ga0182040_101881614F008441N/AVGSSLALAGALIQRGEWEDVRALASFLASAGEESAAAELRIQLGGTVWETHREQLRAISNDMPAAAIEPAINALRAVLREVPEEFPDRNREVNCYLPPLASAIHAIMREQEAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFEGICLRPGGKTA
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