NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182039_10051630

Scaffold Ga0182039_10051630


Overview

Basic Information
Taxon OID3300016422 Open in IMG/M
Scaffold IDGa0182039_10051630 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2803
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007575Metagenome348Y
F015555Metagenome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0182039_100516305F007575N/AMTQPATPPMISVLHDQGHCVGFLRSAGPRGFMAYDSDGQPLGLFQDKQPANEVIKAASIYTRDCN
Ga0182039_100516306F015555N/AAGSTARRKLCRRPKCEGRYRKNSAHYSFLGADTASAANVPRSAQSTGIKSAGLDDRPWYLVDGPKISACVYHCATLPVDPDIAARVNDWGRIRKEIAWSKRRPPAPKEMQSDWKPCSPSVPVADDLSIPDFLKREPAASPEGLLVAAE
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