NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182039_10053594

Scaffold Ga0182039_10053594


Overview

Basic Information
Taxon OID3300016422 Open in IMG/M
Scaffold IDGa0182039_10053594 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2760
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008263Metagenome / Metatranscriptome336N
F093597Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0182039_100535942F093597N/AMKNPLGSFDYRVACDDFFLYELGRLIDEDRASLNDEEFCRLVESGVHEHIERRLEIRAAIAARLRRLQGPAAGVLHLVEDIEAPLRAIPLILQSYTEYIFNRLEQCADETPDVRIETAADLLLESPEDRSSAETAIGILGSTQSAVSARVLAHVISEPMLEEDLERKAYAHVQAMWPLPRPYILYSLKPHTHEDIPFRWFQLLIDCNEPSAVDRILEEVLAHAVDATCREDLMTLVELLNQARDPAAEEKILQVLNSEEISPAGREMLEGFLRNTKTQWHKDTGALDPWAGLDRLYAANKRYLSAAKLFDAGHKLEAGRKLDQLLKEEPRYPFAVMLKQLI
Ga0182039_100535944F008263N/ALTNLRTGPVIEGFEDCALGEFVKAQLEALSQNGEPPAKCEVHGLDPFLELAEPDQADRLRDLISVCEFRSNEFTPESAVRFLKESGFFDEYIIVGVKRGNGWRRSRCITTFEGRPSDAATILGHLAEYFGKEQQDDKPREP
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