NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182039_10335257

Scaffold Ga0182039_10335257


Overview

Basic Information
Taxon OID3300016422 Open in IMG/M
Scaffold IDGa0182039_10335257 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1265
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005865Metagenome388Y
F083098Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0182039_103352571F005865GAGGMPAPEPGPEWVLSGVNPRLDSATESELSKAARSAWPKALAHVRQVQSRDPFDDDGILVAEVWENVLQSVSKTLDRMNGRRGEIKDLEAYLLGSFYHRLGRALKKEERREEMIHLVPSALELEVLAKTSHAQQPDIEDSAHAREILDRMDKWTREVWVAREYGYSWK
Ga0182039_103352572F083098N/AMEDGINPERKKQSQSFPWVDEIDRILVVGMKYGPRGTQEAVRRVRQLTPELAPAQVWHRMRHLRDKERGSATPVDLTESAIEILREGYRSGGRKKTEAIKTVRALYPGLAGYAVSRFARSQGWLVETQANKQKGDRRPWTREEEKELFVRAGYEPVKAIAKRLQRSEQSVRFRLKGRAISAKV
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