NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182039_11096906

Scaffold Ga0182039_11096906


Overview

Basic Information
Taxon OID3300016422 Open in IMG/M
Scaffold IDGa0182039_11096906 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)716
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015902Metagenome / Metatranscriptome251N
F091983Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0182039_110969061F091983AGGAGMAPKSNKSFAKATTKFGLATVIAALWMTAVPITGAVADVQISPARAQAIQQCNRLAARYPLH
Ga0182039_110969062F015902GGAGGMGKVLFSLAFATAVFAVASSEASAASFVCQAVGPRSVGYGRAYFVADAKWQALIRCERYS

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