NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182039_11553816

Scaffold Ga0182039_11553816


Overview

Basic Information
Taxon OID3300016422 Open in IMG/M
Scaffold IDGa0182039_11553816 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)603
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008904Metagenome326Y
F015369Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0182039_115538161F008904N/ALLWWPASAEVHLDYTFSQWERLHDDDRAAYIARSIDMLGTMAGPEPAQKAARHYSQCLMRSRLTARELASFFREYVRARPELQGSSVQHAMNDYLHALCGRPAD
Ga0182039_115538162F015369N/ATRKMPNETHLKRLISDAVFEAHNTHGGQAVGDRLHISREDSRIIASAVFDVLRRVNVLLIDQPGQSNPETA

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