NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182038_10248974

Scaffold Ga0182038_10248974


Overview

Basic Information
Taxon OID3300016445 Open in IMG/M
Scaffold IDGa0182038_10248974 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1427
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003243Metagenome / Metatranscriptome498Y
F037953Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0182038_102489741F003243N/APRMLASLFSYFFCMITVLTAVVAFLTSFSNISTIGNGRHHLRPPVIGRTVAVEIQRRPPPVVKEEARAKDASPVVHTAKMESKKSKHYKPKVVARHPNNYGYGNARGYASGYGPNSLFFR
Ga0182038_102489742F037953GGAGGMPRYHFVVRTPDHTHDDPDGMDFPNLEAAKEHGHRIVRELREEDGYTPGDSALLIQG

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