NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182038_11368306

Scaffold Ga0182038_11368306


Overview

Basic Information
Taxon OID3300016445 Open in IMG/M
Scaffold IDGa0182038_11368306 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)634
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010363Metagenome / Metatranscriptome305Y
F021618Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0182038_113683061F021618AGGGGGMSNQTSEAFAYIEREYKDVKGRVELQRRVVEQLHMVEADAGEAEAALNALLDDEASKLRILDYLRKATSWKKCQPIAFSDGGLAGHA
Ga0182038_113683062F010363GAGMSLEDDLRRVEEHVAEARRFVQRQKGLIVRLRAARASTLDAQRILWLLEANLRRLEEHRDLLSTR

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